JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPYL4_chr6_116244964_116259075	0/0	t0017	2868	1	0	1	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0018	2868	1	0	1	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL4_chr6_116244964_116259075	0/0	t0019	2868	1	1	0	0	0	0	copy fasta	TSPYL4	chr6	116244964	116259075
TSPYL5_chr8_97268488_97282928	1/0	t0001	3188	129	17	25	75	2	9	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0002	3188	107	2	27	59	4	15	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0003	3188	70	36	7	22	2	3	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0004	3187	22	3	2	16	0	1	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0005	3187	15	1	5	0	3	6	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0006	3187	11	9	2	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0007	3187	10	10	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/1	t0008	3187	8	2	2	0	3	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0009	3188	6	0	0	0	0	6	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0010	3188	5	5	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0011	3187	3	3	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0012	3188	3	0	0	0	0	3	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0013	3186	3	3	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0014	3187	2	0	0	2	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0015	3187	2	0	0	2	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0016	3188	1	0	0	1	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0017	3187	1	0	0	1	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0018	3188	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0019	3188	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0020	3188	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0021	3188	1	0	1	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0022	3188	1	0	0	0	1	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0023	3187	1	1	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0024	3188	1	1	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0025	3189	1	1	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0026	3188	1	0	0	1	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0027	3188	1	0	0	0	1	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0028	3188	1	1	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0029	3169	1	0	0	0	0	1	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0030	3186	1	1	0	0	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL5_chr8_97268488_97282928	0/0	t0031	3188	1	0	0	1	0	0	copy fasta	TSPYL5	chr8	97268488	97282928
TSPYL6_chr2_54248178_54261229	1/0	t0001	1820	197	32	44	88	11	21	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0002	1820	104	13	20	50	3	18	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/1	t0003	1817	50	2	10	30	2	5	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0004	1820	13	12	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0005	1820	9	9	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0006	1820	7	5	2	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0007	1820	5	4	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0008	1820	5	2	1	0	2	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0009	1820	4	0	0	4	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0010	1817	4	4	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0011	1820	4	3	1	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0012	1820	3	3	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0013	1820	3	0	0	3	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0014	1820	3	0	0	3	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0015	1820	3	3	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0016	1817	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229