JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSPYL6_chr2_54248178_54261229	0/0	t0017	1820	2	2	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0018	1820	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0019	1814	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0020	1820	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0021	1817	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0022	1814	2	0	0	2	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0023	1820	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0024	1820	1	0	0	0	0	1	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0025	1820	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0026	1820	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0027	1820	1	1	0	0	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0028	1820	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0029	1820	1	0	0	0	0	1	copy fasta	TSPYL6	chr2	54248178	54261229
TSPYL6_chr2_54248178_54261229	0/0	t0030	1820	1	0	0	1	0	0	copy fasta	TSPYL6	chr2	54248178	54261229
TSR1_chr17_2317396_2341457	0/0	t0001	1830	136	22	16	82	5	11	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	1/0	t0002	1831	115	26	17	43	6	22	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0003	1830	66	16	18	24	1	7	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0004	1830	38	12	1	19	2	4	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0005	1830	8	0	7	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0006	1830	8	0	0	8	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0007	1831	7	6	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0008	1830	5	0	5	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0009	1831	4	4	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0010	1831	4	2	2	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0011	1830	2	2	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0012	1831	2	0	1	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0013	1830	2	1	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0014	1830	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0015	1830	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0016	1831	1	0	0	0	0	1	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0017	1831	1	0	1	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/1	t0018	1830	1	0	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0019	1831	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0020	1831	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0021	1831	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0022	1831	1	1	0	0	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0023	1831	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR1_chr17_2317396_2341457	0/0	t0024	1831	1	0	0	1	0	0	copy fasta	TSR1	chr17	2317396	2341457
TSR2_chrX_54435404_54453032	1/1	t0001	3501	105	12	28	43	7	13	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0002	3501	66	0	10	51	1	4	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0003	3499	31	12	2	15	0	2	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0004	3501	18	16	1	0	0	1	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0005	3502	10	7	1	1	1	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0006	3503	10	9	1	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0007	3502	5	0	1	3	0	1	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0008	3495	5	0	1	0	1	3	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0009	3501	5	5	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0010	3502	3	0	0	3	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0011	3502	3	0	2	0	0	1	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0012	3498	3	0	0	3	0	0	copy fasta	TSR2	chrX	54435404	54453032