JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSR2_chrX_54435404_54453032	0/0	t0013	3501	3	3	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0014	3501	2	0	2	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0015	3500	2	0	0	2	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0016	3500	2	1	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0017	3502	2	2	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0018	3501	2	2	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0019	3502	2	1	1	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0020	3502	2	2	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0021	3501	1	0	0	0	0	1	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0022	3501	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0023	3503	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0024	4732	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0025	3504	1	1	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0026	3502	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0027	3500	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0028	3501	1	0	0	0	1	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0029	3498	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0030	3501	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0031	3502	1	0	0	1	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0032	3501	1	0	1	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0033	3501	1	0	1	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR2_chrX_54435404_54453032	0/0	t0034	3501	1	1	0	0	0	0	copy fasta	TSR2	chrX	54435404	54453032
TSR3_chr16_1344240_1356878	1/1	t0001	272	335	66	66	139	18	44	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0002	272	18	15	2	1	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0003	272	3	3	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0004	272	3	3	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0005	272	2	2	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0006	272	1	1	0	0	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0007	272	1	0	0	1	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSR3_chr16_1344240_1356878	0/0	t0008	272	1	0	0	1	0	0	copy fasta	TSR3	chr16	1344240	1356878
TSSC4_chr11_2395750_2408876	1/1	t0001	483	418	95	77	186	15	43	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	t0002	483	10	0	4	0	3	3	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	t0003	483	3	1	0	0	0	2	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	t0004	483	2	0	0	0	0	2	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	t0005	483	2	0	0	2	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSC4_chr11_2395750_2408876	0/0	t0006	483	1	0	1	0	0	0	copy fasta	TSSC4	chr11	2395750	2408876
TSSK1B_chr5_113427553_113439989	1/0	t0001	1334	199	20	35	102	11	30	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0002	1334	53	10	16	23	1	3	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/1	t0003	1334	29	2	4	15	1	6	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0004	1334	15	6	1	7	0	1	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0005	1334	15	9	5	0	1	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0006	1334	14	14	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0007	1334	10	10	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0008	1334	9	8	1	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0009	1334	5	0	0	5	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0010	1334	5	0	0	5	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0011	1334	4	4	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0012	1334	3	1	1	0	0	1	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0013	1334	2	0	0	2	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0014	1334	2	0	1	0	0	1	copy fasta	TSSK1B	chr5	113427553	113439989