JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSSK1B_chr5_113427553_113439989	0/0	t0015	1334	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0016	1334	1	0	1	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0017	1334	1	1	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0018	1334	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0019	1334	1	0	1	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0020	1334	1	1	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0021	1334	1	1	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0022	1334	1	0	0	1	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK1B_chr5_113427553_113439989	0/0	t0023	1334	1	1	0	0	0	0	copy fasta	TSSK1B	chr5	113427553	113439989
TSSK2_chr22_19126308_19137622	1/1	t0001	239	432	96	76	192	18	48	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	t0002	239	4	0	0	4	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	t0003	239	2	0	0	2	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	t0004	239	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK2_chr22_19126308_19137622	0/0	t0005	239	1	0	0	1	0	0	copy fasta	TSSK2	chr22	19126308	19137622
TSSK3_chr1_32357539_32369312	1/1	t0001	220	283	83	52	98	12	36	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	t0002	220	4	4	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	t0003	218	2	2	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	t0004	218	2	2	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK3_chr1_32357539_32369312	0/0	t0005	220	1	1	0	0	0	0	copy fasta	TSSK3	chr1	32357539	32369312
TSSK4_chr14_24200696_24213248	1/1	t0001	331	424	86	76	200	16	44	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	t0002	331	2	2	0	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK4_chr14_24200696_24213248	0/0	t0003	331	2	2	0	0	0	0	copy fasta	TSSK4	chr14	24200696	24213248
TSSK6_chr19_19509219_19520548	1/1	t0001	509	378	86	62	164	16	48	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	t0002	509	4	4	0	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	t0003	509	3	3	0	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSSK6_chr19_19509219_19520548	0/0	t0004	509	1	1	0	0	0	0	copy fasta	TSSK6	chr19	19509219	19520548
TSTD1_chr1_161032631_161043964	1/1	t0001	220	384	80	66	175	17	44	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	t0002	220	5	4	1	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	t0003	220	1	0	0	0	1	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	t0004	234	1	0	0	1	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD1_chr1_161032631_161043964	0/0	t0005	220	1	0	1	0	0	0	copy fasta	TSTD1	chr1	161032631	161043964
TSTD2_chr9_97595080_97638368	1/1	t0001	2566	267	31	48	140	13	33	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0002	2566	20	0	12	7	0	1	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0003	2566	14	0	0	14	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0004	2566	13	12	1	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0005	2566	12	12	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0006	2566	11	10	1	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0007	2566	8	6	2	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0008	2566	6	6	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0009	2566	3	3	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0010	2566	3	0	0	0	1	2	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0011	2566	2	2	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0012	2566	2	0	0	0	0	2	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0013	2566	2	2	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0014	2566	2	2	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0015	2566	1	0	0	0	0	1	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0016	2577	1	0	0	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0017	2566	1	1	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0018	2566	1	0	0	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0019	2566	1	0	0	1	0	0	copy fasta	TSTD2	chr9	97595080	97638368