JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TSTD2_chr9_97595080_97638368	0/0	t0020	2566	1	1	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0021	2566	1	0	0	0	0	1	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0022	2566	1	1	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD2_chr9_97595080_97638368	0/0	t0023	2566	1	1	0	0	0	0	copy fasta	TSTD2	chr9	97595080	97638368
TSTD3_chr6_99516049_99538185	0/1	t0001	1584	94	14	13	60	1	5	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0002	1592	89	1	19	62	0	7	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0003	1582	59	2	15	28	3	11	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0004	1584	40	8	4	22	1	5	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0005	1582	34	17	3	7	0	7	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0006	1582	23	16	2	2	0	3	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	1/0	t0007	1580	22	1	16	0	2	2	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0008	1586	11	5	3	0	3	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0009	1584	10	10	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0010	1594	10	0	0	9	0	1	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0011	1582	8	0	3	0	5	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0012	1584	7	2	1	0	0	4	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0013	1581	4	4	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0014	1586	4	0	0	4	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0015	1582	3	2	1	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0016	1586	2	1	0	0	1	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0017	1584	2	0	2	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0018	1584	1	1	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0019	1592	1	0	0	1	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0020	1582	1	0	0	1	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0021	1582	1	0	0	0	0	1	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0022	1584	1	0	1	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0023	1580	1	1	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0024	1592	1	0	0	0	0	1	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0025	1580	1	0	0	0	0	1	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0026	1590	1	0	0	1	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0027	1596	1	0	0	1	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0028	1592	1	0	1	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0029	1584	1	1	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0030	1580	1	1	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TSTD3_chr6_99516049_99538185	0/0	t0031	1483	1	1	0	0	0	0	copy fasta	TSTD3	chr6	99516049	99538185
TST_chr22_37005865_37024447	1/1	t0001	232	435	96	80	200	17	40	copy fasta	TST	chr22	37005865	37024447
TST_chr22_37005865_37024447	0/0	t0002	232	1	0	0	0	1	0	copy fasta	TST	chr22	37005865	37024447
TTBK1_chr6_43238481_43293258	1/1	t0001	3165	304	78	51	129	10	34	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0002	3165	11	5	0	3	0	3	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0003	3165	4	4	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0004	3165	2	0	2	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0005	3165	2	0	2	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0006	3165	2	0	1	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0007	3165	2	0	0	0	2	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0008	3165	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0009	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0010	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0011	3165	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0012	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0013	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258