JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTBK1_chr6_43238481_43293258	0/0	t0014	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0015	3165	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0016	3165	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0017	3165	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0018	3165	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0019	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0020	3165	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0021	3165	1	1	0	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0022	3165	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0023	3165	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0024	3165	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0025	3165	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0026	3165	1	0	0	0	0	1	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0027	3165	1	0	0	1	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK1_chr6_43238481_43293258	0/0	t0028	3165	1	0	1	0	0	0	copy fasta	TTBK1	chr6	43238481	43293258
TTBK2_chr15_42733730_42925778	0/1	t0001	7474	63	11	10	32	3	6	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	1/0	t0002	7474	31	25	2	0	0	3	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0003	7474	26	2	2	17	0	5	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0004	7475	16	0	0	16	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0005	7474	14	10	1	2	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0006	7474	12	1	1	8	1	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0007	7472	9	0	3	1	1	4	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0008	7473	6	0	0	6	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0009	7471	5	0	0	5	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0010	7474	4	0	0	3	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0011	7472	4	0	0	0	3	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0012	7474	4	3	1	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0013	7471	3	3	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0014	7471	3	3	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0015	7471	3	3	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0016	7474	3	0	1	2	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0017	7475	3	0	0	3	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0018	7474	3	0	1	2	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0019	7471	2	2	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0020	7474	2	1	1	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0021	7474	2	0	0	2	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0022	7475	2	0	0	2	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0023	7474	2	0	1	0	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0024	7474	2	2	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0025	7471	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0026	7471	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0027	7471	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0028	7471	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0029	7474	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0030	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0031	7474	1	0	1	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0032	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0033	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0034	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0035	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778