Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BUB3_chr10_123149402_123175467	0/0	t0061	6717	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0062	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0063	6716	1	0	1	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0064	6715	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0065	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0066	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0067	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0068	6715	1	0	1	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0069	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0070	6715	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0071	6715	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0072	6715	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0073	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0074	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0075	6715	1	0	0	0	0	1	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0076	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0077	6715	1	0	0	0	1	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0078	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0079	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0080	6715	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0081	6716	1	0	1	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0082	6716	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0083	6716	1	0	0	1	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	t0084	6716	1	1	0	0	0	0	copy fasta	BUB3	chr10	123149402	123175467
BUD13_chr11_116743173_116777987	1/1	t0001	333	342	55	65	168	11	41	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0002	333	53	10	3	39	0	1	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0003	333	31	19	11	0	1	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0004	333	7	6	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0005	333	3	3	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0006	333	1	0	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0007	333	1	1	0	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0008	333	1	0	0	1	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	t0009	333	1	0	1	0	0	0	copy fasta	BUD13	chr11	116743173	116777987
BUD23_chr7_73678597_73703212	0/0	t0001	356	90	9	10	62	0	9	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/1	t0002	358	87	9	19	45	3	10	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0003	357	82	43	15	14	3	7	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0004	356	72	3	19	29	9	12	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	1/0	t0005	356	17	13	1	0	0	2	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0006	356	15	14	1	0	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0007	357	5	1	3	0	1	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0008	359	4	0	2	2	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0009	356	1	0	0	1	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	t0010	358	1	0	0	1	0	0	copy fasta	BUD23	chr7	73678597	73703212
BUD31_chr7_99403969_99424616	1/1	t0001	618	283	32	40	162	13	34	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	t0002	618	57	43	6	1	3	4	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	t0003	618	16	16	0	0	0	0	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	t0004	618	1	1	0	0	0	0	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	t0005	618	1	1	0	0	0	0	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	t0006	618	1	1	0	0	0	0	copy fasta	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	t0007	618	1	0	0	1	0	0	copy fasta	BUD31	chr7	99403969	99424616