JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTBK2_chr15_42733730_42925778	0/0	t0036	7474	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0037	7474	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0038	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0039	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0040	7472	1	0	0	0	0	1	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0041	7472	1	0	1	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0042	7475	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0043	7474	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0044	7474	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0045	7474	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0046	7473	1	0	0	1	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0047	7474	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTBK2_chr15_42733730_42925778	0/0	t0048	7475	1	1	0	0	0	0	copy fasta	TTBK2	chr15	42733730	42925778
TTC12_chr11_113309583_113371387	1/1	t0001	139	338	79	58	141	12	46	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	t0002	139	3	1	2	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	t0003	139	2	2	0	0	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC12_chr11_113309583_113371387	0/0	t0004	139	1	0	0	1	0	0	copy fasta	TTC12	chr11	113309583	113371387
TTC13_chr1_230901243_230983861	0/0	t0001	694	171	34	17	82	11	27	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	1/1	t0002	694	158	51	33	56	4	12	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	t0003	694	2	2	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	t0004	694	1	0	0	1	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	t0005	694	1	0	0	1	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	t0006	694	1	0	0	0	0	1	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	t0007	676	1	1	0	0	0	0	copy fasta	TTC13	chr1	230901243	230983861
TTC13_chr1_230901243_230983861	0/0	t0008	694	1	0	0	0	1	0	copy fasta	TTC13	chr1	230901243	230983861
TTC14_chr3_180597163_180616130	1/1	t0001	688	287	70	54	120	13	28	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	t0002	688	23	7	11	0	1	4	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	t0003	688	17	13	2	2	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	t0004	688	4	4	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	t0005	688	1	0	1	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	t0006	688	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC14_chr3_180597163_180616130	0/0	t0007	688	1	1	0	0	0	0	copy fasta	TTC14	chr3	180597163	180616130
TTC16_chr9_127711079_127736590	1/0	t0001	253	174	52	30	73	4	14	copy fasta	TTC16	chr9	127711079	127736590
TTC16_chr9_127711079_127736590	0/1	t0002	253	160	42	42	37	6	32	copy fasta	TTC16	chr9	127711079	127736590
TTC17_chr11_43353920_43499931	1/1	t0001	1063	256	57	60	94	11	32	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0002	1063	20	18	2	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0003	1063	13	0	2	7	3	1	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0004	1063	3	0	2	0	0	1	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0005	1063	3	0	0	3	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0006	1063	1	1	0	0	0	0	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0007	1063	1	0	0	0	0	1	copy fasta	TTC17	chr11	43353920	43499931
TTC17_chr11_43353920_43499931	0/0	t0008	1063	1	0	0	0	0	1	copy fasta	TTC17	chr11	43353920	43499931
TTC19_chr17_15994824_16034404	1/1	t0001	1908	95	13	18	49	5	8	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0002	1909	25	1	5	9	0	10	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0003	1907	25	9	4	10	0	2	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0004	1918	23	0	9	6	4	4	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0005	1920	15	3	2	10	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0006	1912	12	5	3	4	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0007	1919	10	1	2	4	1	2	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0008	1921	8	1	1	6	0	0	copy fasta	TTC19	chr17	15994824	16034404