JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC19_chr17_15994824_16034404	0/0	t0009	1919	6	6	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0010	1903	6	5	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0011	1911	5	5	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0012	1924	5	0	4	1	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0013	1920	4	0	2	0	0	2	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0014	1917	4	0	0	2	1	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0015	1902	4	1	0	3	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0016	1913	3	3	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0017	1913	3	1	1	1	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0018	1912	3	0	1	0	1	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0019	1911	3	1	1	0	0	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0020	1911	3	3	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0021	1923	3	0	1	2	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0022	1918	3	0	0	3	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0023	1910	3	0	1	2	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0024	1918	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0025	1917	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0026	1910	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0027	1910	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0028	1902	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0029	1910	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0030	1932	2	0	2	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0031	1913	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0032	1919	2	1	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0033	1910	2	2	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0034	1925	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0035	1922	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0036	1921	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0037	1918	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0038	1917	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0039	1913	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0040	1911	1	0	0	0	0	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0041	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0042	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0043	1900	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0044	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0045	1908	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0046	1907	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0047	1909	1	0	0	0	0	1	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0048	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0049	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0050	1909	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0051	1908	1	0	0	1	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0052	1933	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0053	1922	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0054	1921	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0055	1921	1	0	1	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0056	1910	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0057	1911	1	1	0	0	0	0	copy fasta	TTC19	chr17	15994824	16034404
TTC19_chr17_15994824_16034404	0/0	t0058	1910	1	0	0	1	0	0	copy fasta	TTC19	chr17	15994824	16034404