JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC22_chr1_54774712_54806323	0/0	t0007	1690	18	0	4	14	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0008	1691	18	0	0	17	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0009	1690	16	0	8	7	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0010	1690	13	1	3	5	1	3	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0011	1692	10	6	1	0	3	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0012	1690	9	8	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0013	1692	9	0	4	1	2	2	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0014	1692	5	1	1	2	1	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0015	1691	5	3	1	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0016	1690	4	1	0	3	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0017	1690	4	3	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0018	1690	3	0	1	1	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0019	1692	3	0	1	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0020	1692	3	0	2	0	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0021	1693	3	1	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0022	1692	2	0	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0023	1693	2	1	0	0	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0024	1690	2	0	1	0	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0025	1693	2	0	0	1	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0026	1691	2	0	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0027	1691	2	0	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0028	1691	2	2	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0029	1692	2	0	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0030	1690	2	2	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0031	1690	2	0	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0032	1691	2	2	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0033	1692	2	0	1	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0034	1690	2	0	0	2	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0035	1692	2	1	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0036	1692	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0037	1693	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0038	1691	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0039	1690	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0040	1691	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0041	1692	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0042	1690	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0043	1690	1	0	0	0	1	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0044	1691	1	0	0	0	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0045	1692	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0046	1692	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0047	1693	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0048	1691	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0049	1692	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0050	1693	1	0	0	0	0	1	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0051	1690	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0052	1692	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0053	1690	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0054	1691	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0055	1691	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0056	1691	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323