JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC22_chr1_54774712_54806323	0/0	t0057	1691	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0058	1692	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0059	1692	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0060	1693	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0061	1691	1	0	1	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0062	1692	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0063	1692	1	1	0	0	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC22_chr1_54774712_54806323	0/0	t0064	1692	1	0	0	1	0	0	copy fasta	TTC22	chr1	54774712	54806323
TTC23L_chr5_34834164_34905511	0/1	t0001	1323	203	44	44	84	6	24	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	1/0	t0002	1323	167	36	30	77	8	15	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0003	1323	4	4	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0004	1323	4	0	0	0	1	3	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0005	1323	3	3	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0006	1323	3	0	3	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0007	1323	2	1	1	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0008	1323	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0009	1323	1	1	0	0	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0010	1323	1	0	0	0	1	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0011	1323	1	0	0	0	0	1	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0012	1323	1	0	0	1	0	0	copy fasta	TTC23L	chr5	34834164	34905511
TTC23L_chr5_34834164_34905511	0/0	t0013	1323	1	0	0	0	0	1	copy fasta	TTC23L	chr5	34834164	34905511
TTC23_chr15_99131323_99254581	0/0	t0001	2532	81	12	22	32	4	11	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0002	2529	70	3	5	53	3	6	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	1/0	t0003	2529	53	13	10	23	2	4	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0004	2532	48	26	8	11	0	3	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0005	2532	24	4	4	10	0	6	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0006	2532	21	7	4	9	1	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/1	t0007	2532	15	4	6	4	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0008	2529	12	9	1	1	0	1	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0009	2529	8	0	4	0	1	3	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0010	2529	6	2	0	4	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0011	2532	6	2	0	1	1	2	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0012	2529	4	1	0	3	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0013	2529	3	0	0	3	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0014	2532	2	0	0	2	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0015	2532	2	2	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0016	2532	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0017	2532	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0018	2529	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0019	2529	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0020	2529	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0021	2529	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0022	2532	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0023	2532	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0024	2532	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0025	2532	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0026	2532	1	0	0	1	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0027	2529	1	1	0	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC23_chr15_99131323_99254581	0/0	t0028	2532	1	0	1	0	0	0	copy fasta	TTC23	chr15	99131323	99254581
TTC24_chr1_156574723_156592719	0/1	t0001	1210	255	75	47	106	8	18	copy fasta	TTC24	chr1	156574723	156592719