JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC24_chr1_156574723_156592719	0/0	t0002	1212	155	10	24	93	3	25	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0003	1210	7	5	2	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0004	1211	4	4	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0005	1212	4	0	2	0	2	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0006	1210	4	0	0	4	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0007	1212	3	0	2	0	0	1	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	1/0	t0008	1210	2	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0009	1210	2	2	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0010	1210	2	0	2	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0011	1210	1	1	0	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0012	1210	1	0	1	0	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0013	1166	1	0	0	0	1	0	copy fasta	TTC24	chr1	156574723	156592719
TTC24_chr1_156574723_156592719	0/0	t0014	1210	1	0	0	1	0	0	copy fasta	TTC24	chr1	156574723	156592719
TTC27_chr2_32623050_32826051	1/1	t0001	357	266	60	48	124	14	18	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	t0002	342	56	24	8	24	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	t0003	357	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC27_chr2_32623050_32826051	0/0	t0004	342	1	1	0	0	0	0	copy fasta	TTC27	chr2	32623050	32826051
TTC28_chr22_27973014_28684840	0/0	t0001	4321	25	2	3	13	2	5	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0002	4310	18	3	6	0	2	7	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0003	4326	17	2	3	10	0	2	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0004	4325	10	2	3	5	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0005	4322	7	3	2	2	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0006	4327	6	0	2	1	2	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0007	4324	6	2	0	4	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0008	4322	5	4	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0009	4323	4	0	3	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0010	4326	4	0	0	4	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0011	4329	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0012	4328	3	0	3	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0013	4327	3	0	3	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0014	4323	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0015	4321	3	0	0	3	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0016	4322	3	0	1	0	2	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0017	4320	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0018	4321	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0019	4319	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0020	4303	3	0	2	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0021	4303	3	3	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0022	4325	3	0	1	2	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0023	4323	3	0	1	1	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0024	4321	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0025	4325	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0026	4325	2	0	0	2	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0027	4324	2	0	0	1	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0028	4322	2	0	0	2	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0029	4322	2	0	0	1	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0030	4321	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0031	4324	2	0	0	2	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0032	4308	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0033	4308	2	2	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840