JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC28_chr22_27973014_28684840	0/0	t0034	4326	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0035	4320	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0036	4331	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0037	4328	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0038	4321	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0039	4311	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0040	4334	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0041	4324	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0042	4328	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0043	4324	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0044	4323	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0045	4323	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0046	4327	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0047	4328	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0048	4322	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0049	4326	1	0	0	0	1	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0050	4326	1	0	0	0	0	1	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0051	4322	1	0	0	0	1	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0052	4319	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0053	4325	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0054	4321	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0055	4321	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0056	4321	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0057	4322	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0058	4323	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0059	4320	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0060	4320	1	0	1	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0061	4321	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0062	4310	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0063	4314	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0064	4325	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0065	4323	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0066	4324	1	1	0	0	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0067	4320	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC28_chr22_27973014_28684840	0/0	t0068	4310	1	0	0	1	0	0	copy fasta	TTC28	chr22	27973014	28684840
TTC29_chr4_146701617_146950864	1/1	t0001	751	269	81	44	106	10	26	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	t0002	751	12	0	0	12	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	t0003	751	10	9	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC29_chr4_146701617_146950864	0/0	t0004	751	1	0	1	0	0	0	copy fasta	TTC29	chr4	146701617	146950864
TTC31_chr2_74478081_74499559	0/1	t0001	1357	191	75	28	74	2	11	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	1/0	t0002	1357	128	16	39	35	12	25	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0003	1357	4	3	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0004	1357	2	1	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0005	1357	1	1	0	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0006	1357	1	0	0	1	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0007	1357	1	1	0	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0008	1357	1	0	0	1	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0009	1357	1	0	0	1	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0010	1357	1	1	0	0	0	0	copy fasta	TTC31	chr2	74478081	74499559
TTC31_chr2_74478081_74499559	0/0	t0011	1357	1	0	1	0	0	0	copy fasta	TTC31	chr2	74478081	74499559