JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC32_chr2_19891631_19906983	1/1	t0001	486	357	94	61	148	16	36	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	t0002	486	59	2	11	36	2	8	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	t0003	486	6	0	0	6	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC32_chr2_19891631_19906983	0/0	t0004	486	2	2	0	0	0	0	copy fasta	TTC32	chr2	19891631	19906983
TTC33_chr5_40706576_40760961	0/0	t0001	4708	92	9	28	36	5	14	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0002	4708	83	27	14	34	4	4	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/1	t0003	4706	49	1	11	33	1	2	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0004	4708	45	7	3	26	0	9	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0005	4708	20	2	4	11	0	3	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0006	4708	19	0	12	0	4	3	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	1/0	t0007	4708	10	8	1	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0008	4708	10	0	0	10	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0009	4708	8	8	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0010	4708	6	6	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0011	4705	4	4	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0012	4708	4	3	1	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0013	4708	4	3	1	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0014	4708	4	3	1	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0015	4715	3	3	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0016	4706	3	0	0	3	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0017	4708	3	3	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0018	4706	3	0	0	3	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0019	4708	2	0	0	2	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0020	4706	2	0	0	2	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0021	4708	1	0	0	0	0	1	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0022	4706	1	0	0	0	1	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0023	4708	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0024	4706	1	0	0	0	0	1	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0025	4708	1	0	0	0	0	1	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0026	4708	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0027	4708	1	0	1	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0028	4708	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0029	4708	1	0	0	0	0	1	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0030	4708	1	0	0	1	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0031	4708	1	0	0	1	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0032	4708	1	0	0	1	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0033	4708	1	0	0	1	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0034	4706	1	0	0	0	0	1	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0035	4706	1	0	0	1	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0036	4708	1	0	0	1	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0037	4708	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0038	4708	1	0	1	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0039	4708	1	1	0	0	0	0	copy fasta	TTC33	chr5	40706576	40760961
TTC33_chr5_40706576_40760961	0/0	t0040	4708	1	0	0	0	1	0	copy fasta	TTC33	chr5	40706576	40760961
TTC36_chr11_118522474_118535993	1/1	t0001	99	410	98	74	178	12	46	copy fasta	TTC36	chr11	118522474	118535993
TTC38_chr22_46263008_46299008	1/0	t0001	1157	173	53	42	41	9	27	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0002	1157	32	27	3	0	0	2	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0003	1157	9	1	3	0	2	3	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0004	1157	5	0	4	0	1	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0005	1157	5	5	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008