JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC38_chr22_46263008_46299008	0/0	t0006	1157	2	2	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0007	1157	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0008	1157	1	1	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0009	1157	1	0	0	1	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0010	1157	1	0	1	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/0	t0011	1157	1	0	1	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC38_chr22_46263008_46299008	0/1	t0012	1157	1	0	0	0	0	0	copy fasta	TTC38	chr22	46263008	46299008
TTC39A_chr1_51282258_51335562	1/1	t0001	985	208	59	53	64	11	19	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0002	985	35	9	4	19	1	2	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0003	985	26	0	2	12	3	9	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0004	985	11	0	0	10	0	1	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0005	985	10	8	2	0	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0006	985	5	5	0	0	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0007	985	5	0	0	5	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0008	985	4	0	1	2	1	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0009	985	1	0	0	0	0	1	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0010	985	1	0	1	0	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0011	985	1	0	0	1	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0012	985	1	1	0	0	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0013	985	1	0	0	1	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39A_chr1_51282258_51335562	0/0	t0014	985	1	0	1	0	0	0	copy fasta	TTC39A	chr1	51282258	51335562
TTC39B_chr9_15158622_15312216	0/0	t0001	8510	7	2	2	3	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0002	8510	5	2	0	3	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0003	8511	5	0	2	1	1	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0004	8527	4	0	0	2	2	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0005	8489	3	1	0	1	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	1/0	t0006	8489	3	0	1	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0007	8493	3	3	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0008	8515	3	2	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0009	8529	3	0	1	1	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0010	8489	3	1	0	2	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0011	8522	3	0	0	1	0	2	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0012	8487	3	0	1	2	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0013	8486	2	2	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0014	8489	2	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0015	8484	2	0	1	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0016	8484	2	0	2	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0017	8525	2	0	0	2	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0018	8526	2	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0019	8525	2	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0020	8524	2	0	0	2	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0021	8510	2	0	0	2	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0022	8525	2	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0023	8510	2	2	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0024	8534	2	0	0	1	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0025	8532	2	0	1	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0026	8498	2	2	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0027	8514	2	2	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0028	8508	2	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0029	8510	2	0	0	2	0	0	copy fasta	TTC39B	chr9	15158622	15312216