JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC39B_chr9_15158622_15312216	0/0	t0030	8485	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0031	8490	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0032	8496	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0033	8489	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0034	8487	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0035	8506	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0036	8494	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0037	8460	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0038	8485	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0039	8487	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0040	8489	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0041	8489	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0042	8486	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0043	8486	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0044	8539	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0045	8489	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0046	8486	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0047	8487	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0048	8531	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0049	8520	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0050	8491	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0051	8526	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0052	8526	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0053	8510	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0054	8482	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0055	8522	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0056	8524	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0057	8528	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0058	8533	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0059	8542	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0060	8500	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0061	8522	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0062	8525	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0063	8492	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0064	8527	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0065	8499	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0066	8525	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0067	8529	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0068	8535	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0069	8492	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0070	8532	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0071	8521	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0072	8525	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0073	8535	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0074	8510	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0075	8528	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0076	8505	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/1	t0077	8510	1	0	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0078	8526	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0079	8493	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216