Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BVES_chr6_105091822_105142157	0/0	t0001	4452	47	0	7	23	1	16	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0002	4468	11	10	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0003	4452	10	2	4	1	2	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/1	t0004	4454	9	2	3	1	0	2	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	1/0	t0005	4468	8	1	2	3	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0006	4451	6	6	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0007	4464	5	5	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0008	4466	5	5	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0009	4453	5	5	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0010	4456	4	4	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0011	4468	4	0	0	4	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0012	4466	4	0	3	0	1	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0013	4452	4	1	2	0	1	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0014	4452	4	4	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0015	4456	3	2	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0016	4468	3	3	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0017	4451	3	0	0	3	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0018	4451	3	0	1	2	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0019	4452	3	0	0	3	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0020	4451	3	0	0	3	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0021	4451	3	1	0	2	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0022	4451	3	0	2	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0023	4464	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0024	4468	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0025	4470	2	0	1	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0026	4467	2	0	0	2	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0027	4468	2	0	0	0	0	2	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0028	4464	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0029	4466	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0030	4451	2	0	0	2	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0031	4452	2	1	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0032	4452	2	0	0	2	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0033	4452	2	0	2	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0034	4452	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0035	4448	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0036	4453	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0037	4460	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0038	4450	2	2	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0039	4462	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0040	4467	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0041	4465	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0042	4600	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0043	4468	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0044	4458	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0045	4454	1	0	0	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0046	4464	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0047	4468	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0048	4468	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0049	4468	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0050	4468	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157