JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC39B_chr9_15158622_15312216	0/0	t0080	8530	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0081	8500	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0082	8526	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0083	8511	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0084	8527	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0085	8520	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0086	8520	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0087	8523	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0088	8504	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0089	8509	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0090	8524	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0091	8525	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0092	8530	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0093	8511	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0094	8529	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0095	8524	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0096	8521	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0097	8541	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0098	8500	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0099	8526	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0100	8528	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0101	8532	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0102	8521	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0103	8525	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0104	8494	1	0	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0105	8498	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0106	8506	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0107	8520	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0108	8526	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0109	8528	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0110	8534	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0111	8521	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0112	8525	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0113	8527	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0114	8533	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0115	8510	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0116	8522	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0117	8522	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0118	8526	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0119	8526	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0120	8528	1	0	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0121	8521	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0122	8524	1	0	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0123	8526	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0124	8479	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0125	8523	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0126	8510	1	1	0	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0127	8524	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0128	8508	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0129	8522	1	0	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216