JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TTC39B_chr9_15158622_15312216	0/0	t0130	8492	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0131	8492	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0132	8490	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0133	8505	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0134	8495	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0135	8528	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0136	8529	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0137	8526	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0138	8530	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0139	8509	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0140	8525	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0141	8527	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0142	8536	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0143	8501	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0144	8507	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0145	8511	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0146	8531	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0147	8482	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0148	8524	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0149	8536	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0150	8523	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0151	8527	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0152	8535	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0153	8530	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0154	8531	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0155	8527	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0156	8537	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0157	8532	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0158	8526	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0159	8497	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0160	8526	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0161	8508	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0162	8504	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0163	8508	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0164	8490	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0165	8489	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0166	8526	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0167	8516	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0168	8510	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0169	8520	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0170	8510	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0171	8506	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0172	8522	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0173	8525	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0174	8527	1	0	1	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0175	8510	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0176	8525	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0177	8511	1	0	0	0	1	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0178	8511	1	0	0	1	0	copy fasta	TTC39B	chr9	15158622	15312216
TTC39B_chr9_15158622_15312216	0/0	t0179	8511	1	1	0	0	0	copy fasta	TTC39B	chr9	15158622	15312216