JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC5_chr14_20281227_20310951	0/0	t0014	3415	5	4	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0015	3421	4	0	4	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0016	3419	4	0	0	4	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0017	3415	4	4	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0018	3415	4	1	3	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0019	3416	3	0	0	3	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0020	3412	3	3	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0021	3417	3	0	0	3	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0022	3414	3	2	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0023	3415	3	0	1	0	2	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0024	3417	2	0	0	2	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0025	3414	2	0	0	1	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0026	3414	2	1	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0027	3418	2	0	2	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0028	3417	2	2	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0029	3417	2	2	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0030	3413	1	0	0	0	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0031	3417	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0032	3416	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0033	3415	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0034	3417	1	0	0	0	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0035	3418	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0036	3417	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0037	3417	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0038	3418	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0039	3419	1	0	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0040	3418	1	0	0	0	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0041	3416	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0042	3413	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0043	3413	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0044	3416	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0045	3413	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0046	3413	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0047	3413	1	0	1	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0048	3416	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0049	3417	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0050	3415	1	0	0	0	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0051	3419	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0052	3415	1	0	0	1	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0053	3416	1	0	0	0	0	1	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0054	3415	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0055	3413	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0056	3416	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0057	3415	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC5_chr14_20281227_20310951	0/0	t0058	3416	1	1	0	0	0	0	copy fasta	TTC5	chr14	20281227	20310951
TTC6_chr14_37590629_37847717	0/1	t0001	906	146	45	31	47	6	16	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	1/0	t0002	902	28	12	5	8	0	2	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0003	906	18	2	4	12	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0004	906	7	6	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0005	902	5	4	1	0	0	0	copy fasta	TTC6	chr14	37590629	37847717