JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC6_chr14_37590629_37847717	0/0	t0006	902	4	1	0	3	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0007	906	3	3	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0008	902	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0009	902	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0010	902	2	2	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0011	902	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0012	906	1	1	0	0	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC6_chr14_37590629_37847717	0/0	t0013	906	1	0	0	1	0	0	copy fasta	TTC6	chr14	37590629	37847717
TTC7A_chr2_46936224_47081123	0/1	t0001	2528	156	20	24	82	6	23	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0002	2528	26	7	3	13	0	3	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0003	2519	22	4	9	4	3	2	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0004	2528	16	6	2	5	0	3	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0005	2528	9	7	2	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0006	2510	8	1	7	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0007	2528	6	4	2	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0008	2528	4	1	0	3	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0009	2528	4	4	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0010	2528	4	3	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0011	2510	4	3	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0012	2528	3	0	3	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0013	2528	3	3	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0014	2519	3	1	1	0	1	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0015	2519	3	3	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0016	2528	2	0	0	2	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0017	2529	2	1	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0018	2528	2	2	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0019	2528	2	1	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0020	2519	2	0	0	0	2	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0021	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0022	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0023	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0024	2529	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0025	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0026	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0027	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0028	2519	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0029	2519	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0030	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0031	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	1/0	t0032	2519	1	0	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0033	2529	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0034	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0035	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0036	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0037	2528	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0038	2528	1	0	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0039	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0040	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0041	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0042	2528	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123