JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC7A_chr2_46936224_47081123	0/0	t0043	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0044	2528	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0045	2528	1	0	1	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0046	2528	1	0	0	0	0	1	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0047	2519	1	0	0	1	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0048	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0049	2510	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0050	2510	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0051	2510	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0052	2501	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7A_chr2_46936224_47081123	0/0	t0053	2528	1	1	0	0	0	0	copy fasta	TTC7A	chr2	46936224	47081123
TTC7B_chr14_90519564_90821430	0/0	t0001	16936	19	1	5	10	0	3	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0002	16941	10	1	6	1	1	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0003	16939	8	0	3	5	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0004	16940	6	0	0	6	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0005	16946	5	0	3	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0006	16938	5	2	0	3	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0007	16943	4	4	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0008	16936	4	0	1	0	0	3	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0009	16937	4	3	0	0	1	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0010	16938	4	3	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	1/0	t0011	16940	3	0	0	0	1	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0012	16942	3	3	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0013	16940	3	0	2	0	0	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0014	16301	3	0	0	3	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0015	16939	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0016	16934	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0017	16931	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0018	16937	2	0	1	0	1	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0019	16945	2	0	2	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0020	16941	2	2	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0021	16941	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0022	16942	2	0	0	0	0	2	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0023	16939	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0024	16938	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0025	16939	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0026	16939	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0027	16301	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0028	16300	2	0	0	2	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0029	16330	2	0	1	0	0	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0030	16941	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0031	16938	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0032	16943	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0033	16941	1	0	0	0	1	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0034	16940	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0035	16943	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0036	16939	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0037	16939	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0038	16405	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0039	16936	1	0	0	0	1	0	copy fasta	TTC7B	chr14	90519564	90821430