JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC7B_chr14_90519564_90821430	0/0	t0090	16939	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0091	16939	1	0	0	0	0	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0092	16939	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0093	16941	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0094	16876	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0095	16942	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0096	16938	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0097	16938	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0098	16934	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0099	16945	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0100	16296	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0101	16943	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0102	16300	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0103	16297	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0104	16301	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0105	16334	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0106	16334	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0107	16941	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0108	16936	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0109	16331	1	0	1	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0110	16925	1	0	0	1	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0111	16949	1	0	0	0	0	1	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0112	16938	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0113	16939	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0114	16935	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0115	16939	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0116	16939	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0117	16336	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC7B_chr14_90519564_90821430	0/0	t0118	16940	1	1	0	0	0	0	copy fasta	TTC7B	chr14	90519564	90821430
TTC8_chr14_88819651_88882988	1/1	t0001	636	284	66	47	128	8	33	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0002	636	92	9	22	46	6	9	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0003	636	11	10	1	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0004	636	3	3	0	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0005	636	3	3	0	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0006	636	2	2	0	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0007	636	2	0	0	2	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0008	636	1	0	0	1	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0009	636	1	0	0	1	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC8_chr14_88819651_88882988	0/0	t0010	636	1	1	0	0	0	0	copy fasta	TTC8	chr14	88819651	88882988
TTC9B_chr19_40211058_40223384	1/1	t0001	109	418	98	74	182	18	44	copy fasta	TTC9B	chr19	40211058	40223384
TTC9C_chr11_62723486_62743636	1/1	t0001	618	340	64	61	168	7	38	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	t0002	618	24	21	3	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	t0003	618	1	1	0	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	t0004	618	1	1	0	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	t0005	618	1	0	0	0	1	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9C_chr11_62723486_62743636	0/0	t0006	618	1	1	0	0	0	0	copy fasta	TTC9C	chr11	62723486	62743636
TTC9_chr14_70636916_70680366	1/0	t0001	4426	102	8	27	53	6	7	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0002	4426	32	0	4	27	0	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0003	4426	31	0	0	31	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0004	4426	24	2	0	18	1	3	copy fasta	TTC9	chr14	70636916	70680366