Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BVES_chr6_105091822_105142157	0/0	t0051	4468	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0052	4450	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0053	4444	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0054	4447	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0055	4468	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0056	4467	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0057	4468	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0058	4468	1	0	0	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0059	4446	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0060	4462	1	0	0	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0061	4452	1	0	0	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0062	4452	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0063	4454	1	0	0	0	1	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0064	4454	1	0	0	0	1	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0065	4454	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0066	4454	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0067	4451	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0068	4452	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0069	4452	1	0	0	0	1	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0070	4452	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0071	4452	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0072	4452	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0073	4452	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0074	4452	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0075	4450	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0076	4448	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0077	4448	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0078	4448	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0079	4449	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0080	4445	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0081	4457	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0082	4446	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0083	4452	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0084	4452	1	0	1	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0085	4453	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0086	4451	1	0	0	1	0	0	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0087	4451	1	0	0	0	0	1	copy fasta	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	t0088	4449	1	1	0	0	0	0	copy fasta	BVES	chr6	105091822	105142157
BYSL_chr6_41916499_41938046	1/1	t0001	405	443	81	79	216	16	49	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	t0002	405	7	7	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	t0003	404	7	7	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	t0004	405	3	3	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	t0005	405	2	0	1	0	0	1	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	t0006	405	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	t0007	405	1	1	0	0	0	0	copy fasta	BYSL	chr6	41916499	41938046
BZW1_chr2_200806910_200832338	0/0	t0001	5239	41	0	8	26	0	7	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	t0002	5146	24	1	7	7	7	2	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	t0003	5147	22	1	7	9	1	4	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	t0004	5254	10	1	0	9	0	0	copy fasta	BZW1	chr2	200806910	200832338
BZW1_chr2_200806910_200832338	0/0	t0005	5148	9	1	2	5	0	1	copy fasta	BZW1	chr2	200806910	200832338