JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC9_chr14_70636916_70680366	0/0	t0005	4426	21	1	8	1	3	8	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0006	4426	16	2	2	12	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0007	4426	15	0	0	15	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0008	4426	12	0	0	6	0	6	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0009	4426	10	0	2	4	0	4	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/1	t0010	4429	9	2	5	0	0	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0011	4426	7	1	2	0	1	3	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0012	4426	7	0	0	7	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0013	4426	7	5	2	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0014	4426	7	7	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0015	4429	6	0	4	0	1	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0016	4429	5	0	0	5	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0017	4429	4	0	2	0	0	2	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0018	4426	4	4	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0019	4426	4	0	1	0	1	2	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0020	4426	4	0	0	4	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0021	4426	4	3	1	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0022	4426	4	4	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0023	4426	4	0	0	2	0	2	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0024	4429	3	0	0	2	0	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0025	4429	3	0	0	3	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0026	4426	3	3	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0027	4426	3	0	0	3	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0028	4426	3	3	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0029	4426	3	2	1	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0030	4429	2	0	0	2	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0031	4426	2	2	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0032	4426	2	0	0	0	1	1	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0033	4426	2	2	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0034	4426	2	0	0	0	0	2	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0035	4426	2	2	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0036	4426	2	0	0	2	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0037	4426	2	1	1	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0038	4432	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0039	4432	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0040	4429	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0041	4429	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0042	4429	1	0	0	1	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0043	4429	1	0	0	1	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0044	4429	1	0	0	0	1	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0045	4429	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0046	4429	1	0	1	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0047	4429	1	0	0	0	1	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0048	4429	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0049	4429	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0050	4429	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0051	4429	1	0	0	1	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0052	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0053	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0054	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366