JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTC9_chr14_70636916_70680366	0/0	t0105	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0106	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0107	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0108	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0109	4426	1	1	0	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTC9_chr14_70636916_70680366	0/0	t0110	4426	1	0	1	0	0	0	copy fasta	TTC9	chr14	70636916	70680366
TTF1_chr9_132370548_132411840	0/1	t0001	426	207	53	37	77	12	27	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	t0002	426	184	27	21	115	4	17	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	t0003	426	4	4	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	1/0	t0004	426	2	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	t0005	428	2	2	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF1_chr9_132370548_132411840	0/0	t0006	428	1	1	0	0	0	0	copy fasta	TTF1	chr9	132370548	132411840
TTF2_chr1_117055326_117112453	0/0	t0001	5951	74	6	12	49	1	6	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/1	t0002	5951	36	3	17	10	2	3	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0003	5939	35	12	12	2	4	5	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0004	5951	32	11	6	10	2	3	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0005	5952	23	3	8	8	2	2	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0006	5938	13	1	0	8	0	4	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0007	5939	11	10	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0008	5952	7	6	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0009	5939	7	0	6	0	0	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0010	5952	6	6	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0011	5951	5	5	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0012	5950	4	0	1	3	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0013	5951	3	0	0	3	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0014	5951	3	3	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0015	5952	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0016	5951	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0017	5951	2	0	0	2	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0018	5952	2	0	0	0	0	2	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0019	5940	2	0	0	1	1	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0020	5951	2	0	2	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0021	5951	2	2	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0022	5951	2	0	0	0	1	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0023	5940	2	0	0	0	0	2	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0024	5939	2	1	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0025	5951	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0026	5952	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0027	5951	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0028	5952	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0029	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0030	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0031	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0032	5950	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0033	5951	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0034	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0035	5952	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0036	5951	1	0	0	0	0	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0037	5951	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0038	5951	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453