JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTF2_chr1_117055326_117112453	0/0	t0039	5951	1	0	0	0	1	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0040	5951	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0041	5950	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0042	5952	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0043	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0044	5941	1	0	0	0	0	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0045	5940	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0046	5939	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0047	5938	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0048	5938	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0049	5939	1	0	0	0	0	1	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0050	5941	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0051	5938	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0052	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0053	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0054	5951	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0055	5952	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0056	5952	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0057	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0058	5952	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0059	5952	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0060	5953	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0061	5951	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	1/0	t0062	5951	1	0	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0063	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0064	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0065	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0066	5952	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0067	5951	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0068	5941	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0069	5940	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0070	5939	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0071	5938	1	0	0	1	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0072	5939	1	0	1	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTF2_chr1_117055326_117112453	0/0	t0073	5969	1	1	0	0	0	0	copy fasta	TTF2	chr1	117055326	117112453
TTI1_chr20_37978021_38038456	0/0	t0001	530	235	67	28	115	4	21	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/1	t0002	530	78	13	14	32	3	15	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	1/0	t0003	530	57	2	20	26	5	3	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0004	528	5	0	0	5	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0005	534	5	5	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0006	532	4	3	1	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0007	530	3	3	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0008	530	3	0	3	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0009	532	2	2	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0010	530	2	0	0	0	0	2	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0011	530	1	0	0	0	0	1	copy fasta	TTI1	chr20	37978021	38038456
TTI1_chr20_37978021_38038456	0/0	t0012	532	1	1	0	0	0	0	copy fasta	TTI1	chr20	37978021	38038456
TTI2_chr8_33493722_33518135	0/1	t0001	604	247	61	32	115	9	29	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	1/0	t0002	605	145	28	28	71	3	14	copy fasta	TTI2	chr8	33493722	33518135
TTI2_chr8_33493722_33518135	0/0	t0003	605	5	0	0	0	0	5	copy fasta	TTI2	chr8	33493722	33518135