JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTI2_chr8_33493722_33518135	0/0	t0004	605	1	1	0	0	0	0	copy fasta	TTI2	chr8	33493722	33518135
TTK_chr6_79999649_80047527	1/1	t0001	393	282	62	45	130	6	37	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0002	393	23	22	1	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0003	393	15	0	5	1	3	6	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0004	393	4	3	0	0	0	1	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0005	393	1	1	0	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0006	393	1	0	0	1	0	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0007	393	1	0	0	0	1	0	copy fasta	TTK	chr6	79999649	80047527
TTK_chr6_79999649_80047527	0/0	t0008	393	1	0	1	0	0	0	copy fasta	TTK	chr6	79999649	80047527
TTLL10_chr1_1168880_1202936	1/1	t0001	267	136	43	37	16	11	27	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0002	267	122	3	23	83	0	13	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0003	267	49	15	4	24	4	2	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0004	266	36	28	3	2	0	3	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0005	262	30	0	0	28	1	1	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0006	267	2	2	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0007	267	1	0	1	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0008	267	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0009	267	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0010	267	1	1	0	0	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0011	267	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0012	283	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL10_chr1_1168880_1202936	0/0	t0013	267	1	0	0	1	0	0	copy fasta	TTLL10	chr1	1168880	1202936
TTLL11_chr9_121810674_122098308	0/0	t0001	7075	31	10	8	5	2	6	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	1/1	t0002	7074	25	4	8	3	3	5	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0003	7075	19	2	7	2	3	5	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0004	7058	9	8	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0005	7061	7	6	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0006	7058	6	5	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0007	7074	5	0	4	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0008	7058	4	4	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0009	7075	4	3	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0010	7076	3	3	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0011	7075	3	3	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0012	7075	3	3	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0013	7071	2	2	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0014	7075	2	0	0	2	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0015	7075	2	0	1	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0016	7074	2	0	2	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0017	7074	2	0	0	2	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0018	7058	2	2	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0019	7074	2	1	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0020	7075	2	2	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0021	7072	2	1	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0022	7072	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0023	7072	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0024	7074	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0025	7075	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0026	7075	1	0	0	0	1	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0027	7075	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0028	7075	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308