JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTLL11_chr9_121810674_122098308	0/0	t0029	7075	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0030	7075	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0031	7074	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0032	7074	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0033	7074	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0034	7074	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0035	7076	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0036	7074	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0037	7058	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0038	7072	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0039	7076	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0040	7076	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0041	7074	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0042	7074	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0043	7075	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0044	7075	1	0	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0045	7075	1	0	0	0	1	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0046	7075	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0047	7075	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0048	7075	1	0	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0049	7075	1	0	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0050	7075	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0051	7058	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0052	7223	1	0	0	1	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0053	7073	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0054	7075	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0055	7061	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0056	7075	1	0	0	0	0	1	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0057	7118	1	1	0	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL11_chr9_121810674_122098308	0/0	t0058	7072	1	0	1	0	0	0	copy fasta	TTLL11	chr9	121810674	122098308
TTLL12_chr22_43161622_43192134	0/0	t0001	1438	119	0	20	87	0	12	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/1	t0002	1452	74	17	11	27	4	14	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0003	1452	67	20	28	0	9	10	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	1/0	t0004	1452	28	2	7	11	1	6	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0005	1452	19	12	3	0	3	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0006	1451	13	4	1	8	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0007	1452	11	7	1	1	0	2	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0008	1426	6	0	0	6	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0009	1440	6	0	0	6	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0010	1449	6	6	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0011	1452	6	6	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0012	1452	6	0	2	4	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0013	1452	4	4	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0014	1449	4	4	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0015	1458	2	0	1	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0016	1452	2	0	0	2	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0017	1438	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0018	1458	1	0	0	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0019	1458	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0020	1451	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134