JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTLL12_chr22_43161622_43192134	0/0	t0021	1452	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0022	1453	1	0	0	0	1	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0023	1438	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0024	1438	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0025	1452	1	0	0	0	0	1	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0026	1438	1	0	0	1	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0027	1452	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0028	1452	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0029	1449	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0030	1452	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0031	1452	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0032	1452	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0033	1452	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0034	1452	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0035	1450	1	0	1	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0036	1450	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL12_chr22_43161622_43192134	0/0	t0037	1451	1	1	0	0	0	0	copy fasta	TTLL12	chr22	43161622	43192134
TTLL13_chr15_90244556_90270477	1/1	t0001	775	149	13	32	78	6	18	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0002	775	108	5	25	58	4	16	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0003	775	98	18	14	61	0	5	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0004	775	60	43	11	0	4	2	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0005	775	10	10	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0006	775	2	2	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0007	775	2	2	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0008	775	1	0	0	1	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0009	775	1	1	0	0	0	0	copy fasta	TTLL13	chr15	90244556	90270477
TTLL13_chr15_90244556_90270477	0/0	t0010	775	1	0	0	0	0	1	copy fasta	TTLL13	chr15	90244556	90270477
TTLL1_chr22_43034516_43094391	0/0	t0001	465	81	10	14	44	2	11	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/1	t0002	465	74	5	13	32	7	16	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0003	468	68	8	8	46	2	4	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0004	466	34	10	14	0	5	5	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0005	466	27	20	3	0	0	4	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0006	468	20	3	8	6	1	2	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0007	465	9	7	1	0	0	1	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0008	465	7	4	2	0	1	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0009	465	6	6	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	1/0	t0010	465	5	2	1	0	0	1	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0011	466	4	3	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0012	466	3	3	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0013	468	3	3	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0014	466	3	3	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0015	465	2	1	0	1	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0016	467	2	2	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0017	467	2	2	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0018	386	1	0	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0019	468	1	0	0	1	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0020	467	1	0	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0021	468	1	0	1	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0022	468	1	0	0	1	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0023	468	1	1	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391