JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTLL1_chr22_43034516_43094391	0/0	t0024	467	1	0	0	1	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0025	468	1	1	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0026	465	1	1	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL1_chr22_43034516_43094391	0/0	t0027	466	1	1	0	0	0	0	copy fasta	TTLL1	chr22	43034516	43094391
TTLL2_chr6_167320086_167347688	0/0	t0001	1098	180	39	31	85	8	17	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/1	t0002	1098	136	12	26	65	7	25	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0003	1098	42	19	7	16	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0004	1098	15	9	2	0	3	1	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0005	1098	13	12	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0006	1098	13	0	2	11	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0007	1098	5	0	0	5	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0008	1098	4	0	0	4	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0009	1098	3	2	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0010	1098	2	2	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0011	1098	2	0	2	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0012	1098	2	0	0	2	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	1/0	t0013	1098	2	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0014	1098	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0015	1098	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0016	1098	1	0	1	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0017	1098	1	0	0	0	0	1	copy fasta	TTLL2	chr6	167320086	167347688
TTLL2_chr6_167320086_167347688	0/0	t0018	1098	1	1	0	0	0	0	copy fasta	TTLL2	chr6	167320086	167347688
TTLL3_chr3_9805262_9841365	0/1	t0001	1054	107	5	18	72	2	9	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0002	1056	106	29	20	36	10	11	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	1/0	t0003	1051	78	11	23	39	2	2	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0004	1054	65	35	6	18	4	2	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0005	1051	7	0	0	7	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0006	1050	7	0	0	2	0	5	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0007	1054	4	0	0	3	0	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0008	1055	3	0	2	0	0	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0009	1057	3	3	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0010	1054	3	0	3	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0011	1053	2	0	1	0	0	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0012	1053	2	0	0	2	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0013	1057	2	2	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0014	1055	2	1	1	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0015	1053	1	0	0	0	0	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0016	1054	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0017	1056	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0018	1056	1	0	0	0	0	1	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0019	1053	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0020	1054	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0021	1056	1	0	0	1	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0022	1054	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL3_chr3_9805262_9841365	0/0	t0023	1054	1	1	0	0	0	0	copy fasta	TTLL3	chr3	9805262	9841365
TTLL4_chr2_218705835_218760416	0/0	t0001	1408	128	52	22	34	5	15	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	1/1	t0002	1408	104	16	19	46	5	16	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0003	1408	8	8	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0004	1408	8	8	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0005	1408	5	5	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416