JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTLL4_chr2_218705835_218760416	0/0	t0006	1408	2	2	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0007	1408	2	0	2	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0008	1408	1	0	1	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0009	1408	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0010	1408	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0011	1408	1	0	0	0	0	1	copy fasta	TTLL4	chr2	218705835	218760416
TTLL4_chr2_218705835_218760416	0/0	t0012	1408	1	1	0	0	0	0	copy fasta	TTLL4	chr2	218705835	218760416
TTLL5_chr14_75656246_75960079	1/1	t0001	871	184	56	26	78	4	18	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	t0002	871	7	7	0	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	t0003	871	2	1	0	0	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	t0004	871	2	2	0	0	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	t0005	871	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	t0006	871	1	0	0	1	0	0	copy fasta	TTLL5	chr14	75656246	75960079
TTLL5_chr14_75656246_75960079	0/0	t0007	871	1	0	0	0	0	1	copy fasta	TTLL5	chr14	75656246	75960079
TTLL6_chr17_48757234_48822229	0/1	t0001	898	224	49	50	102	7	15	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	1/0	t0002	898	55	30	3	14	2	5	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	t0003	898	48	5	17	4	7	15	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	t0004	898	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	t0005	898	1	0	0	1	0	0	copy fasta	TTLL6	chr17	48757234	48822229
TTLL6_chr17_48757234_48822229	0/0	t0006	898	1	0	0	0	0	1	copy fasta	TTLL6	chr17	48757234	48822229
TTLL7_chr1_83860024_84004132	0/0	t0001	5319	101	14	23	44	7	13	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0002	5317	89	17	17	48	0	7	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	1/0	t0003	5317	34	4	9	11	5	4	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0004	5323	9	6	2	0	1	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0005	5317	8	7	0	0	1	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0006	5317	6	6	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0007	5319	4	3	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0008	5317	4	4	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0009	5317	4	4	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/1	t0010	5317	4	1	1	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0011	5319	3	0	1	0	0	2	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0012	5317	2	0	0	2	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0013	5321	2	0	2	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0014	5321	2	0	0	2	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0015	5321	2	2	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0016	5317	2	2	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0017	5317	2	2	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0018	5319	2	0	0	2	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0019	5319	2	0	2	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0020	5323	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0021	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0022	5319	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0023	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0024	5317	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0025	5317	1	0	1	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0026	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0027	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0028	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0029	5317	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0030	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132