JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTLL7_chr1_83860024_84004132	0/0	t0031	5319	1	0	1	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0032	5319	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0033	5317	1	1	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0034	5317	1	0	1	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0035	5317	1	1	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0036	5317	1	1	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0037	5317	1	0	0	1	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0038	5317	1	0	0	0	0	1	copy fasta	TTLL7	chr1	83860024	84004132
TTLL7_chr1_83860024_84004132	0/0	t0039	5317	1	1	0	0	0	0	copy fasta	TTLL7	chr1	83860024	84004132
TTLL8_chr22_50013575_50063298	1/1	t0001	393	122	27	23	56	3	11	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	t0002	393	99	25	21	35	7	11	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	t0003	393	2	2	0	0	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL8_chr22_50013575_50063298	0/0	t0004	393	1	0	0	1	0	0	copy fasta	TTLL8	chr22	50013575	50063298
TTLL9_chr20_31865634_31950000	1/1	t0001	2301	107	8	26	49	8	14	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0002	2301	50	28	16	1	2	3	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0003	2301	46	33	3	3	0	7	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0004	2301	13	5	6	0	2	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0005	2301	13	2	6	0	3	2	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0006	2301	7	0	0	7	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0007	2301	4	4	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0008	2301	3	3	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0009	2301	3	0	0	3	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0010	2301	3	0	2	0	1	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0011	2301	2	0	0	2	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0012	2301	2	2	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0013	2301	1	0	1	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0014	2301	1	0	1	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0015	2301	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0016	2301	1	0	0	0	0	1	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0017	2301	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0018	2301	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0019	2301	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0020	2301	1	0	1	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0021	2301	1	0	0	0	0	1	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0022	2301	1	0	0	1	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTLL9_chr20_31865634_31950000	0/0	t0023	2301	1	1	0	0	0	0	copy fasta	TTLL9	chr20	31865634	31950000
TTL_chr2_112477156_112546739	0/0	t0001	13148	50	2	16	21	4	7	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0002	13150	33	0	9	21	1	2	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0003	13151	18	0	1	16	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0004	13152	16	8	3	5	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0005	13150	10	0	1	9	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0006	13156	8	8	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0007	13134	8	7	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0008	13148	6	0	1	0	3	2	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0009	13149	6	4	2	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0010	13151	6	0	0	6	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0011	13151	5	0	0	5	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0012	13157	4	4	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0013	13148	4	0	0	3	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0014	13148	4	3	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739