JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTL_chr2_112477156_112546739	0/0	t0015	13128	3	3	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0016	13148	3	0	0	3	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0017	13149	3	0	0	1	0	2	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0018	13147	3	0	0	3	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0019	13151	3	0	0	3	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0020	13150	3	3	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0021	13152	3	0	0	0	1	2	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0022	13151	3	0	0	3	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0023	13151	3	2	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0024	13152	3	2	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0025	13149	3	0	3	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0026	13152	3	1	1	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0027	13151	3	0	0	3	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0028	13155	2	2	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0029	13143	2	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0030	13151	2	0	0	0	1	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0031	13151	2	0	0	2	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0032	13152	2	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0033	13151	2	0	1	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0034	13153	2	0	0	1	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0035	13152	2	0	0	1	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0036	13136	2	0	0	2	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0037	13153	2	0	0	2	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0038	13152	2	0	0	2	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0039	13149	2	0	1	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0040	13148	2	2	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0041	13150	2	0	1	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0042	13155	1	0	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0043	13152	1	0	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0044	13148	1	0	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0045	13148	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0046	13149	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0047	13148	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0048	13134	1	0	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0049	13134	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0050	13134	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0051	13151	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0052	13151	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0053	13156	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0054	13155	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0055	13155	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0056	13154	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0057	13151	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0058	13149	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0059	13150	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0060	13151	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0061	13148	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0062	13152	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0063	13149	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0064	13149	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739