JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TTL_chr2_112477156_112546739	0/0	t0065	13150	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0066	13150	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0067	13151	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0068	13150	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0069	13150	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0070	13156	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0071	13148	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0072	13151	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0073	13150	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0074	13148	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0075	13151	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0076	13150	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0077	13148	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0078	13150	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0079	13148	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0080	13150	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0081	13148	1	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0082	13147	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0083	13149	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0084	13147	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0085	13149	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0086	13148	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0087	13147	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0088	13152	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0089	13149	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0090	13150	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0091	13152	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0092	13149	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0093	13148	1	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0094	13150	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0095	13152	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0096	13148	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0097	13149	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0098	13150	1	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0099	13148	1	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0100	13148	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0101	13148	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0102	13150	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0103	13152	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0104	13148	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0105	13150	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0106	13152	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0107	13151	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0108	13151	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0109	13150	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0110	13152	1	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0111	13152	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0112	13151	1	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0113	13151	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0114	13151	1	0	0	1	0	copy fasta	TTL	chr2	112477156	112546739