JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTL_chr2_112477156_112546739	0/0	t0115	13152	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0116	13150	1	0	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0117	13149	1	0	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0118	13150	1	0	1	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0119	13149	1	0	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0120	13148	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0121	13148	1	0	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0122	13152	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0123	13149	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0124	13134	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0125	13133	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0126	13132	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0127	13151	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0128	13143	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0129	13147	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0130	13152	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0131	13151	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0132	13149	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0133	13149	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0134	13151	1	0	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0135	13148	1	0	0	0	0	1	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0136	13137	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0137	13152	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0138	13150	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0139	13151	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0140	13151	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0141	13076	1	0	0	1	0	0	copy fasta	TTL	chr2	112477156	112546739
TTL_chr2_112477156_112546739	0/0	t0142	13151	1	1	0	0	0	0	copy fasta	TTL	chr2	112477156	112546739
TTN_chr2_178520989_178812423	0/0	t0001	1250	139	43	26	49	0	21	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	1/1	t0002	1249	83	22	17	28	0	14	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0003	1250	11	0	0	11	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0004	1250	3	3	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0005	1250	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0006	1249	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0007	1250	1	0	0	0	0	1	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0008	1250	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0009	1249	1	0	1	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178520989_178812423	0/0	t0010	1250	1	1	0	0	0	0	copy fasta	TTN	chr2	178520989	178812423
TTN_chr2_178739405_178812423	1/1	t0001	1406	150	51	32	45	6	14	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0002	1406	90	13	17	51	0	9	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0003	1406	46	0	13	33	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0004	1406	33	0	1	24	0	8	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0005	1406	21	0	9	4	0	8	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0006	1406	7	7	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0007	1406	4	4	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0008	1406	3	3	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0009	1406	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0010	1406	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0011	1406	2	2	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423
TTN_chr2_178739405_178812423	0/0	t0012	1406	1	1	0	0	0	0	copy fasta	TTN	chr2	178739405	178812423