JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTYH1_chr19_54410464_54441904	0/0	t0008	703	5	5	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0009	704	3	0	3	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0010	704	2	0	0	0	0	2	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0011	703	2	1	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0012	704	2	0	1	0	1	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0013	705	2	2	0	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0014	704	1	0	1	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0015	703	1	0	1	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0016	704	1	0	0	1	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0017	704	1	0	0	0	0	1	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0018	704	1	0	1	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0019	704	1	0	0	0	0	1	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0020	704	1	0	0	0	0	1	copy fasta	TTYH1	chr19	54410464	54441904
TTYH1_chr19_54410464_54441904	0/0	t0021	704	1	0	1	0	0	0	copy fasta	TTYH1	chr19	54410464	54441904
TTYH2_chr17_74208571_74267020	1/1	t0001	1829	200	33	39	92	11	23	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0002	1829	62	30	13	7	3	9	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0003	1829	42	3	11	12	4	12	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0004	1829	10	10	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0005	1829	5	5	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0006	1829	5	0	0	5	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0007	1829	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0008	1829	4	4	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0009	1829	4	3	1	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0010	1829	3	3	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0011	1829	2	0	0	2	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0012	1829	2	2	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0013	1829	1	0	0	0	0	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0014	1829	1	0	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0015	1816	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0016	1829	1	0	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0017	1829	1	0	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0018	1829	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0019	1829	1	1	0	0	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0020	1829	1	0	0	0	0	1	copy fasta	TTYH2	chr17	74208571	74267020
TTYH2_chr17_74208571_74267020	0/0	t0021	1829	1	0	0	1	0	0	copy fasta	TTYH2	chr17	74208571	74267020
TTYH3_chr7_2626986_2669802	1/1	t0001	3234	156	19	35	80	5	15	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0002	3234	91	2	18	55	1	15	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0003	3234	27	9	7	8	1	2	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0004	3234	19	0	4	9	3	3	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0005	3234	13	13	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0006	3234	9	9	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0007	3234	9	4	4	0	1	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0008	3234	6	6	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0009	3234	5	5	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0010	3234	4	0	2	0	2	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0011	3234	4	4	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0012	3234	3	3	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0013	3234	3	2	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0014	3234	3	3	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0015	3234	3	1	2	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802