JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TTYH3_chr7_2626986_2669802	0/0	t0016	3234	2	0	0	2	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0017	3234	2	2	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0018	3234	2	2	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0019	3234	2	2	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0020	3234	2	2	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0021	3234	2	2	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0022	3234	2	0	2	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0023	3234	2	0	0	2	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0024	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0025	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0026	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0027	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0028	3234	1	0	0	0	0	1	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0029	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0030	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0031	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0032	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0033	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0034	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0035	3234	1	0	0	0	1	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0036	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0037	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0038	3234	1	0	0	0	0	1	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0039	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0040	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0041	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0042	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0043	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0044	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0045	3234	1	0	0	1	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0046	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0047	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0048	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0049	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0050	3234	1	0	0	0	0	1	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0051	3192	1	0	0	0	0	1	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0052	3234	1	1	0	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0053	3234	1	0	1	0	0	0	copy fasta	TTYH3	chr7	2626986	2669802
TTYH3_chr7_2626986_2669802	0/0	t0054	3219	1	0	0	0	0	1	copy fasta	TTYH3	chr7	2626986	2669802
TUBA1A_chr12_49179795_49194080	1/1	t0001	317	358	93	62	151	16	34	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	t0002	317	1	1	0	0	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	t0003	317	1	0	0	1	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	t0004	317	1	0	0	1	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1A_chr12_49179795_49194080	0/0	t0005	317	1	0	0	1	0	0	copy fasta	TUBA1A	chr12	49179795	49194080
TUBA1B_chr12_49122782_49136395	0/0	t0001	272	205	67	25	90	8	15	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	1/1	t0002	272	167	27	39	74	6	19	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	t0003	272	10	0	0	8	0	2	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1B_chr12_49122782_49136395	0/0	t0004	272	2	0	2	0	0	0	copy fasta	TUBA1B	chr12	49122782	49136395
TUBA1C_chr12_49260082_49279600	0/1	t0001	1474	96	19	33	30	6	7	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0002	1477	72	3	4	55	0	10	copy fasta	TUBA1C	chr12	49260082	49279600