JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBA1C_chr12_49260082_49279600	0/0	t0003	1475	46	12	10	16	3	5	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0004	1478	34	2	4	21	1	6	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0005	1476	20	7	3	9	1	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0006	1476	15	4	1	10	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0007	1479	11	0	0	8	1	2	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0008	1467	9	2	4	0	1	2	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0009	1469	8	8	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0010	1464	7	5	1	0	1	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0011	1478	7	3	0	4	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0012	1474	6	6	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0013	1475	5	3	1	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0014	1479	5	0	0	4	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0015	1481	4	4	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	1/0	t0016	1474	3	0	2	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0017	1467	3	3	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0018	1474	3	0	0	1	2	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0019	1475	3	2	0	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0020	1478	3	0	1	0	0	2	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0021	1469	2	0	2	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0022	1480	2	0	1	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0023	1481	2	2	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0024	1484	2	2	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0025	1477	2	1	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0026	1477	2	0	0	2	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0027	1480	2	1	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0028	1472	2	0	0	0	0	2	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0029	1480	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0030	1481	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0031	1477	1	0	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0032	1480	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0033	1477	1	0	1	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0034	1469	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0035	1478	1	0	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0036	1474	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0037	1476	1	0	0	1	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0038	1477	1	0	0	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0039	1478	1	0	0	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0040	1475	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0041	1477	1	0	0	0	0	1	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA1C_chr12_49260082_49279600	0/0	t0042	1474	1	1	0	0	0	0	copy fasta	TUBA1C	chr12	49260082	49279600
TUBA3C_chr13_19168772_19186824	1/1	t0001	169	436	98	77	201	16	42	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	t0002	169	9	0	2	2	2	3	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	t0003	169	1	0	0	1	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	t0004	169	1	0	1	0	0	0	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3C_chr13_19168772_19186824	0/0	t0005	92	1	0	0	0	0	1	copy fasta	TUBA3C	chr13	19168772	19186824
TUBA3D_chr2_131471119_131487934	1/1	t0001	168	342	58	69	151	16	46	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	t0002	168	26	17	5	0	0	4	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	t0003	168	14	13	1	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	t0004	168	4	4	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	t0005	168	3	0	0	3	0	0	copy fasta	TUBA3D	chr2	131471119	131487934