JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBA3D_chr2_131471119_131487934	0/0	t0006	168	2	1	1	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3D_chr2_131471119_131487934	0/0	t0007	168	1	1	0	0	0	0	copy fasta	TUBA3D	chr2	131471119	131487934
TUBA3E_chr2_130186745_130203439	1/1	t0001	166	223	36	39	106	9	31	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	t0002	87	177	33	38	82	9	15	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	t0003	166	26	25	1	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	t0004	166	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA3E_chr2_130186745_130203439	0/0	t0005	166	1	1	0	0	0	0	copy fasta	TUBA3E	chr2	130186745	130203439
TUBA4A_chr2_219244710_219258918	1/1	t0001	703	367	86	65	156	10	48	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	t0002	703	7	0	6	0	1	0	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4A_chr2_219244710_219258918	0/0	t0003	703	2	0	1	0	1	0	copy fasta	TUBA4A	chr2	219244710	219258918
TUBA4B_chr2_219248243_219277197	1/0	t0001	664	158	56	19	77	1	4	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/1	t0002	664	145	18	43	35	13	35	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0003	666	22	4	6	6	0	6	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0004	664	7	0	2	5	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0005	664	6	5	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0006	664	2	0	0	2	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0007	665	2	2	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0008	665	2	2	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0009	664	1	0	0	0	0	1	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0010	664	1	0	0	0	0	1	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0011	664	1	0	1	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0012	664	1	0	0	0	0	1	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0013	664	1	0	0	1	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA4B_chr2_219248243_219277197	0/0	t0014	664	1	1	0	0	0	0	copy fasta	TUBA4B	chr2	219248243	219277197
TUBA8_chr22_18105809_18136732	1/1	t0001	654	389	65	76	189	16	41	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	t0002	654	23	20	3	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	t0003	654	8	7	1	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	t0004	654	3	3	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	t0005	654	1	0	0	0	0	1	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	t0006	654	1	1	0	0	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBA8_chr22_18105809_18136732	0/0	t0007	654	1	0	0	1	0	0	copy fasta	TUBA8	chr22	18105809	18136732
TUBAL3_chr10_5388101_5409828	0/1	t0001	453	316	69	53	150	8	35	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	1/0	t0002	453	90	17	17	38	8	9	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	t0003	452	6	0	0	6	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	t0004	453	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	t0005	453	1	1	0	0	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	t0006	453	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBAL3_chr10_5388101_5409828	0/0	t0007	453	1	0	0	1	0	0	copy fasta	TUBAL3	chr10	5388101	5409828
TUBB1_chr20_59014429_59031654	1/1	t0001	1966	329	83	59	133	11	41	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0002	1966	58	2	15	30	5	6	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0003	1966	4	2	2	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0004	1966	3	2	1	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0005	1966	2	0	0	0	0	2	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0006	1966	1	1	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0007	1966	1	0	0	0	0	1	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0008	1966	1	0	0	1	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0009	1966	1	0	1	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0010	1966	1	1	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB1_chr20_59014429_59031654	0/0	t0011	1966	1	1	0	0	0	0	copy fasta	TUBB1	chr20	59014429	59031654
TUBB2A_chr6_3148666_3162544	1/1	t0001	279	410	90	54	206	14	44	copy fasta	TUBB2A	chr6	3148666	3162544