JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBB2A_chr6_3148666_3162544	0/0	t0002	279	4	0	4	0	0	0	copy fasta	TUBB2A	chr6	3148666	3162544
TUBB2B_chr6_3219277_3232653	0/1	t0001	584	302	80	55	118	12	36	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	1/0	t0002	585	43	0	8	30	0	4	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	0/0	t0003	586	14	12	1	1	0	0	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB2B_chr6_3219277_3232653	0/0	t0004	585	1	0	0	1	0	0	copy fasta	TUBB2B	chr6	3219277	3232653
TUBB3_chr16_89918342_89941097	0/0	t0001	354	288	69	48	129	5	37	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	1/1	t0002	354	84	18	25	21	9	9	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	t0003	354	20	11	3	0	4	2	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	t0004	354	2	0	2	0	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	t0005	354	2	0	2	0	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	t0006	354	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB3_chr16_89918342_89941097	0/0	t0007	348	1	0	0	1	0	0	copy fasta	TUBB3	chr16	89918342	89941097
TUBB4A_chr19_6489319_6507309	0/0	t0001	943	107	3	13	77	3	11	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	1/0	t0002	943	48	11	8	16	1	11	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0003	943	41	3	3	31	1	3	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0004	943	38	3	14	10	5	6	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/1	t0005	943	34	6	22	0	3	2	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0006	943	25	0	3	21	0	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0007	943	20	5	0	13	1	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0008	943	16	1	9	4	1	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0009	943	14	13	1	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0010	943	11	9	2	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0011	943	9	2	3	1	3	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0012	943	9	0	1	4	0	4	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0013	943	6	6	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0014	943	6	6	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0015	943	4	4	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0016	943	4	4	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0017	943	3	3	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0018	943	3	2	1	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0019	943	3	3	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0020	943	3	3	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0021	943	3	0	0	3	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0022	943	2	2	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0023	943	2	0	0	1	0	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0024	943	2	2	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0025	943	2	2	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0026	943	1	0	0	1	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0027	898	1	1	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0028	943	1	0	0	0	0	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0029	943	1	0	0	1	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0030	753	1	1	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0031	943	1	0	0	0	0	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0032	943	1	1	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0033	753	1	1	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0034	943	1	0	0	0	0	1	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0035	943	1	0	1	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0036	943	1	0	0	1	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0037	943	1	0	1	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309
TUBB4A_chr19_6489319_6507309	0/0	t0038	943	1	1	0	0	0	0	copy fasta	TUBB4A	chr19	6489319	6507309