JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBB4B_chr9_137236287_137248707	1/1	t0001	226	360	61	65	170	16	46	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	t0002	226	46	32	7	7	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	t0003	229	9	3	5	1	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	t0004	226	2	2	0	0	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB4B_chr9_137236287_137248707	0/0	t0005	226	1	0	1	0	0	0	copy fasta	TUBB4B	chr9	137236287	137248707
TUBB6_chr18_12303241_12331616	0/1	t0001	539	203	25	40	97	8	32	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	1/0	t0002	539	116	45	18	49	1	2	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	t0003	539	73	11	15	38	1	8	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	t0004	539	5	5	0	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	t0005	539	2	2	0	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	t0006	539	1	0	0	1	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	t0007	539	1	0	0	1	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB6_chr18_12303241_12331616	0/0	t0008	539	1	0	1	0	0	0	copy fasta	TUBB6	chr18	12303241	12331616
TUBB8B_chr18_42221_54615	0/0	t0001	228	309	55	45	169	6	34	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	1/0	t0002	228	82	32	25	3	8	13	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	t0003	228	3	3	0	0	0	0	copy fasta	TUBB8B	chr18	42221	54615
TUBB8B_chr18_42221_54615	0/0	t0004	228	1	0	0	0	0	1	copy fasta	TUBB8B	chr18	42221	54615
TUBB8_chr10_41888_54296	0/1	t0001	228	375	80	63	176	13	42	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	1/0	t0002	228	13	11	1	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0003	228	6	1	4	0	1	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0004	228	4	4	0	0	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0005	228	2	0	0	1	1	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0006	228	1	0	0	0	0	1	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0007	228	1	0	0	0	1	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0008	228	1	0	0	1	0	0	copy fasta	TUBB8	chr10	41888	54296
TUBB8_chr10_41888_54296	0/0	t0009	228	1	0	0	0	0	1	copy fasta	TUBB8	chr10	41888	54296
TUBB_chr6_30715352_30730422	0/1	t0001	1181	250	38	43	128	12	28	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0002	1183	46	3	1	41	0	1	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0003	1182	37	0	14	9	4	10	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0004	1183	36	19	3	8	0	6	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0005	1181	34	17	14	1	2	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0006	1182	14	11	1	1	0	1	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0007	1181	3	0	3	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0008	1181	2	2	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0009	1182	1	0	1	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0010	1181	1	0	0	1	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0011	1182	1	0	0	1	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0012	1181	1	1	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0013	1181	1	1	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0014	1181	1	1	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0015	1181	1	1	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0016	1181	1	1	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBB_chr6_30715352_30730422	0/0	t0017	1183	1	1	0	0	0	0	copy fasta	TUBB	chr6	30715352	30730422
TUBD1_chr17_59854479_59897943	1/0	t0001	1130	206	44	39	79	14	29	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/1	t0002	1131	41	14	9	12	0	5	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0003	1130	25	1	6	16	0	2	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0004	1131	19	17	1	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0005	1129	18	1	2	11	1	3	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0006	1130	16	0	0	16	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0007	1131	8	2	0	5	0	1	copy fasta	TUBD1	chr17	59854479	59897943