JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBD1_chr17_59854479_59897943	0/0	t0008	1130	5	0	0	5	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0009	1127	5	0	3	0	1	1	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0010	1129	3	2	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0011	1131	2	2	0	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0012	1132	2	1	1	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0013	1130	2	0	1	0	0	1	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0014	1130	1	1	0	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0015	1130	1	1	0	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0016	1130	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0017	1130	1	1	0	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0018	1129	1	1	0	0	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0019	1130	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0020	1129	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBD1_chr17_59854479_59897943	0/0	t0021	1130	1	0	0	1	0	0	copy fasta	TUBD1	chr17	59854479	59897943
TUBE1_chr6_112065663_112092482	1/1	t0001	798	397	82	74	183	13	43	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0002	804	6	6	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0003	798	6	0	0	6	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0004	798	3	3	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0005	798	2	2	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0006	798	2	0	0	2	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0007	798	1	0	0	1	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0008	798	1	0	0	0	1	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0009	798	1	1	0	0	0	0	copy fasta	TUBE1	chr6	112065663	112092482
TUBE1_chr6_112065663_112092482	0/0	t0010	798	1	0	0	0	0	1	copy fasta	TUBE1	chr6	112065663	112092482
TUBG1_chr17_42604683_42620238	1/1	t0001	253	385	90	74	166	12	41	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	0/0	t0002	253	1	0	0	1	0	0	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	0/0	t0003	253	1	0	0	0	0	1	copy fasta	TUBG1	chr17	42604683	42620238
TUBG1_chr17_42604683_42620238	0/0	t0004	253	1	0	0	1	0	0	copy fasta	TUBG1	chr17	42604683	42620238
TUBG2_chr17_42654284_42672006	1/1	t0001	427	362	79	78	150	12	41	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	t0002	427	7	7	0	0	0	0	copy fasta	TUBG2	chr17	42654284	42672006
TUBG2_chr17_42654284_42672006	0/0	t0003	427	1	0	0	0	0	1	copy fasta	TUBG2	chr17	42654284	42672006
TUBGCP2_chr10_133273635_133313872	0/1	t0001	1220	197	48	57	54	12	25	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0002	1220	42	31	5	3	0	3	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	1/0	t0003	1221	33	7	7	13	1	4	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0004	1221	4	1	0	3	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0005	1220	2	2	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0006	1221	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0007	1220	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0008	1221	1	0	0	1	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0009	1220	1	0	0	0	1	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0010	1221	1	0	1	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP2_chr10_133273635_133313872	0/0	t0011	1220	1	1	0	0	0	0	copy fasta	TUBGCP2	chr10	133273635	133313872
TUBGCP3_chr13_112480011_112593153	0/0	t0001	1156	152	42	29	55	6	20	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	1/1	t0002	1156	129	27	16	73	4	7	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0003	1156	13	0	1	11	0	1	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0004	1156	5	4	1	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0005	1156	3	0	1	2	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0006	1156	2	2	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0007	1156	2	0	0	2	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0008	1156	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153