JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBGCP3_chr13_112480011_112593153	0/0	t0009	1156	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0010	1156	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0011	1156	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0012	1182	1	0	0	1	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP3_chr13_112480011_112593153	0/0	t0013	1156	1	1	0	0	0	0	copy fasta	TUBGCP3	chr13	112480011	112593153
TUBGCP4_chr15_43366101_43414771	0/0	t0001	4810	71	21	6	35	0	9	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	1/1	t0002	4812	68	3	14	37	3	9	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0003	4811	31	0	4	25	1	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0004	4803	16	0	0	16	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0005	4808	15	5	4	0	4	2	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0006	4808	13	0	1	12	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0007	4809	9	6	1	0	0	2	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0008	4810	7	5	1	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0009	4812	6	0	0	6	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0010	4810	6	6	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0011	4813	5	0	2	1	0	2	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0012	4808	5	5	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0013	4808	5	0	1	0	0	4	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0014	4812	4	0	1	3	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0015	4812	4	1	0	2	1	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0016	4810	4	3	1	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0017	4810	4	0	1	3	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0018	4809	4	4	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0019	4813	3	2	1	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0020	4810	3	3	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0021	4809	3	1	0	2	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0022	4808	3	3	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0023	4813	2	0	1	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0024	4812	2	0	0	2	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0025	4809	2	2	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0026	4809	2	0	0	2	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0027	4809	2	0	1	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0028	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0029	4812	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0030	4811	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0031	4811	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0032	4811	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0033	4809	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0034	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0035	4813	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0036	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0037	4811	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0038	4812	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0039	4812	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0040	4812	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0041	4812	1	0	0	0	1	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0042	4811	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0043	4812	1	0	0	1	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0044	4812	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0045	4811	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771