JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUBGCP4_chr15_43366101_43414771	0/0	t0046	4811	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0047	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0048	4810	1	0	1	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0049	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0050	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0051	4809	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0052	4809	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0053	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0054	4809	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0055	4809	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0056	4809	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0057	4808	1	0	1	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0058	4808	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0059	4808	1	0	0	0	0	1	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0060	4809	1	0	1	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0061	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0062	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0063	4811	1	0	1	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP4_chr15_43366101_43414771	0/0	t0064	4810	1	1	0	0	0	0	copy fasta	TUBGCP4	chr15	43366101	43414771
TUBGCP5_chr15_22994177_23044569	0/1	t0001	670	230	52	44	81	14	38	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	t0002	670	90	16	4	66	0	4	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	t0003	670	30	15	4	9	0	2	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP5_chr15_22994177_23044569	0/0	t0004	670	1	1	0	0	0	0	copy fasta	TUBGCP5	chr15	22994177	23044569
TUBGCP6_chr22_50212694_50250023	1/0	t0001	607	239	45	53	101	9	30	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/1	t0002	608	149	39	19	66	7	17	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	t0003	607	41	6	3	29	0	3	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	t0004	607	5	5	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	t0005	607	1	1	0	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUBGCP6_chr22_50212694_50250023	0/0	t0006	607	1	0	1	0	0	0	copy fasta	TUBGCP6	chr22	50212694	50250023
TUB_chr11_8076211_8111243	0/0	t0001	4925	85	4	16	46	3	16	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0002	4924	67	12	10	40	0	5	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0003	4924	32	3	6	19	2	2	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0004	4924	21	0	1	17	0	3	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0005	4924	17	0	1	9	1	6	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0006	4925	14	0	0	10	0	4	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/1	t0007	4934	12	1	2	6	0	2	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0008	4923	9	0	4	5	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0009	4934	9	0	4	5	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0010	4924	8	8	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0011	4934	8	0	0	7	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0012	4926	6	0	0	6	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0013	4923	6	6	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0014	4927	5	0	0	5	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0015	4935	5	0	5	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0016	4927	4	0	4	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0017	4930	4	4	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	1/0	t0018	4925	4	3	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0019	4922	4	0	0	4	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0020	4924	3	0	0	0	1	2	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0021	4924	3	0	1	2	0	0	copy fasta	TUB	chr11	8076211	8111243