JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUB_chr11_8076211_8111243	0/0	t0022	4925	3	0	2	0	1	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0023	4926	3	3	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0024	4924	3	3	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0025	4925	3	0	0	2	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0026	4927	3	0	3	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0027	4925	3	0	3	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0028	4925	3	0	0	2	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0029	4930	3	3	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0030	4924	3	0	0	3	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0031	4925	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0032	4943	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0033	4925	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0034	4924	2	1	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0035	4927	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0036	4925	2	0	0	0	0	2	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0037	4923	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0038	4923	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0039	4934	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0040	4923	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0041	4924	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0042	4924	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0043	4924	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0044	4904	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0045	4934	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0046	4928	2	2	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0047	4924	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0048	4925	2	0	0	2	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0049	4928	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0050	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0051	4925	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0052	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0053	4925	1	0	0	0	1	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0054	4925	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0055	4944	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0056	4925	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0057	4944	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0058	4926	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0059	4925	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0060	4925	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0061	4887	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0062	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0063	4926	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0064	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0065	4935	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0066	4937	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0067	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0068	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0069	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0070	4934	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0071	4934	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243