JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUB_chr11_8076211_8111243	0/0	t0072	4925	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0073	4925	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0074	4924	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0075	4924	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0076	4925	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0077	4925	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0078	4925	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0079	4926	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0080	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0081	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0082	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0083	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0084	4944	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0085	4944	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0086	4925	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0087	4935	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0088	4924	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0089	4934	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0090	4928	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0091	4928	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0092	4933	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0093	4928	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0094	4925	1	0	0	0	1	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0095	4924	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0096	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0097	4904	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0098	4924	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0099	4924	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0100	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0101	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0102	4934	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0103	4926	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0104	4927	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0105	4935	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0106	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0107	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0108	4924	1	0	0	0	0	1	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0109	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0110	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0111	4924	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0112	4925	1	0	0	1	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0113	4924	1	0	1	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0114	4925	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUB_chr11_8076211_8111243	0/0	t0115	4924	1	1	0	0	0	0	copy fasta	TUB	chr11	8076211	8111243
TUFM_chr16_28837411_28851348	1/0	t0001	644	270	47	30	146	9	37	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/1	t0002	644	71	10	28	23	3	6	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	t0003	644	32	11	2	19	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	t0004	644	17	16	1	0	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	t0005	641	3	0	0	3	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	t0006	644	1	0	0	1	0	0	copy fasta	TUFM	chr16	28837411	28851348