JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUFM_chr16_28837411_28851348	0/0	t0007	644	1	0	1	0	0	0	copy fasta	TUFM	chr16	28837411	28851348
TUFM_chr16_28837411_28851348	0/0	t0008	644	1	0	0	0	0	1	copy fasta	TUFM	chr16	28837411	28851348
TUFT1_chr1_151535309_151588583	0/1	t0001	1935	133	11	28	67	4	22	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	1/0	t0002	1935	87	29	17	34	4	2	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0003	1931	61	0	8	42	0	11	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0004	1935	21	14	3	2	0	2	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0005	1935	12	0	1	9	1	1	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0006	1935	7	7	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0007	1935	7	7	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0008	1931	5	0	5	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0009	1935	5	0	2	0	0	3	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0010	1935	4	0	2	0	1	1	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0011	1935	3	3	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0012	1935	3	3	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0013	1935	2	2	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0014	1935	2	2	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0015	1935	2	2	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0016	1935	2	2	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0017	1935	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0018	1935	1	0	0	1	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0019	1935	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0020	1935	1	0	0	1	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0021	1935	1	0	0	1	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0022	1935	1	0	0	1	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0023	1935	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0024	1935	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0025	1935	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUFT1_chr1_151535309_151588583	0/0	t0026	1935	1	1	0	0	0	0	copy fasta	TUFT1	chr1	151535309	151588583
TUG1_chr22_30964265_30984395	0/1	t0001	7013	114	3	25	71	4	10	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0002	7013	104	21	17	48	5	13	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0003	7014	36	3	15	11	0	7	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0004	7012	33	12	2	17	0	2	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	1/0	t0005	7013	9	0	7	0	1	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0006	7011	8	7	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0007	7012	8	2	0	2	3	1	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0008	7013	7	0	0	7	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0009	7010	7	7	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0010	7014	7	0	0	7	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0011	7014	6	2	0	4	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0012	7014	6	5	1	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0013	7012	5	5	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0014	7013	4	0	0	4	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0015	7012	4	0	2	1	1	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0016	7013	4	0	0	4	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0017	7013	4	2	2	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0018	7014	3	0	3	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0019	7013	3	3	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0020	7014	3	0	1	0	1	1	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0021	7013	3	3	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0022	7013	3	3	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395