JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TUG1_chr22_30964265_30984395	0/0	t0023	7015	3	0	2	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0024	7013	2	0	2	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0025	7012	2	2	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0026	7013	2	2	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0027	7013	2	0	0	2	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0028	7014	2	0	1	0	1	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0029	7013	2	0	0	0	0	2	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0030	7013	2	0	0	2	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0031	7014	2	2	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0032	7013	2	0	0	0	0	2	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0033	7012	2	0	0	2	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0034	7012	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0035	7012	1	0	0	0	1	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0036	7013	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0037	7011	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0038	7012	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0039	7012	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0040	7012	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0041	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0042	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0043	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0044	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0045	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0046	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0047	7012	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0048	7012	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0049	7012	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0050	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0051	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0052	7013	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0053	7014	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0054	7013	1	0	0	0	0	1	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0055	7013	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0056	7013	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0057	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0058	7013	1	0	0	0	1	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0059	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0060	7013	1	0	1	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0061	7013	1	0	1	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0062	7015	1	0	0	0	0	1	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0063	7014	1	0	0	0	0	1	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0064	7014	1	0	0	0	0	1	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0065	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0066	7013	1	1	0	0	0	0	copy fasta	TUG1	chr22	30964265	30984395
TUG1_chr22_30964265_30984395	0/0	t0067	7013	1	0	0	1	0	0	copy fasta	TUG1	chr22	30964265	30984395
TULP1_chr6_35492874_35517896	0/1	t0001	492	241	76	37	97	9	21	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	1/0	t0002	492	163	7	38	90	7	20	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	t0003	491	7	7	0	0	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	t0004	492	1	0	0	1	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP1_chr6_35492874_35517896	0/0	t0005	492	1	0	0	0	0	1	copy fasta	TULP1	chr6	35492874	35517896