JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TULP1_chr6_35492874_35517896	0/0	t0006	492	1	0	1	0	0	0	copy fasta	TULP1	chr6	35492874	35517896
TULP2_chr19_48875967_48903744	1/1	t0001	200	173	8	37	98	6	22	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	t0002	200	173	76	21	63	3	10	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	t0003	200	16	1	10	0	3	2	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	t0004	200	1	1	0	0	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP2_chr19_48875967_48903744	0/0	t0005	200	1	0	0	1	0	0	copy fasta	TULP2	chr19	48875967	48903744
TULP3_chr12_2885891_2946138	0/0	t0001	1864	137	27	29	61	6	14	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/1	t0002	1864	97	18	19	48	1	10	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0003	1749	68	5	11	39	4	9	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0004	1862	24	19	2	3	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0005	1862	7	6	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0006	1860	6	5	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	1/0	t0007	1752	5	3	1	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0008	1749	5	0	4	0	0	1	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0009	1750	3	3	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0010	1748	3	0	0	2	1	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0011	1862	3	3	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0012	1864	3	3	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0013	1862	2	2	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0014	1752	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0015	1862	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0016	1864	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0017	1864	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0018	1864	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0019	1863	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0020	1708	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0021	1862	1	1	0	0	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP3_chr12_2885891_2946138	0/0	t0022	1864	1	0	0	1	0	0	copy fasta	TULP3	chr12	2885891	2946138
TULP4_chr6_158307465_158516828	0/1	t0001	6688	39	1	9	25	1	2	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0002	6678	28	13	8	5	1	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0003	6689	14	0	2	10	0	2	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0004	6688	12	3	0	5	0	4	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0005	6678	9	0	3	5	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0006	6678	9	0	5	0	4	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0007	6678	7	0	1	6	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0008	6679	7	1	3	2	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0009	6682	7	0	3	2	0	2	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0010	6688	6	0	0	5	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0011	6682	6	0	2	2	2	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0012	6678	5	1	1	2	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0013	6688	5	1	2	0	1	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0014	6679	4	1	1	2	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0015	6688	3	3	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0016	6685	3	3	0	0	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0017	6679	3	1	0	2	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0018	6689	3	0	1	0	0	2	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0019	6688	3	1	1	0	1	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0020	6689	3	0	0	2	0	1	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0021	6683	3	1	1	1	0	0	copy fasta	TULP4	chr6	158307465	158516828
TULP4_chr6_158307465_158516828	0/0	t0022	6688	2	0	0	2	0	0	copy fasta	TULP4	chr6	158307465	158516828